Print Height Not matching G-Code with supports

  • Hi, I'm a little confused.
    Whenever I add supports to my print, starting on the 2nd layer, some of the lines matches the height of +2 layers.
    For instance, at layer no 2, with 0.25 layer height
    First layer: 0.4 (all lines)
    Second layer: 0.65 for most lines then 1.15
    Third layer: 0.90, obviously clashing with previous layers.

    Why is that? How to fix it?
    This is what the 2nd layer looks like, side view:

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